Scaffold Ga0115007_10042267

Overview

Basic Information

• Taxon OID: 3300009441
• Scaffold ID: Ga0115007_10042267
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2841
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 78.8669
  • Long. (^o): -3.2286
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003677	Metagenome / Metatranscriptome	474	Y
F003834	Metagenome / Metatranscriptome	466	N
F042572	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115007_100422671	F042572	AGGAGG	MSRNLIIYKVQYVLKSDPWDWGSANNKFIKIKRIVMTPDEVDQTSGYWRNHRNVERKFFKQMDHIEGDTYNSRYRIRRINKA*
Ga0115007_100422677	F003834	AGGAG	MSSSKTPIRQAEMDYLDHFMETKYDERKNVLKTEMQDTIDTESEENFDAFKEKLKLTKLHEDVRINFDDHEKFANEMDSTLLLKKGKLDNSINDLEVKLENWKKVRKWDTEIERSLIKHPDELDRLLKKICHEETSRDFYSGPRGKALQMLDMSKEYCKNLLNAGQSLATVWGVVGKEMAKEKINTSTVPKPEFLAITK*
Ga0115007_100422678	F003677	N/A	LVEALHILWGLALYRKVFMVDEALYYFDKDVGKKVYEIEYEVTYVTKWQVLAEDRDKAFDVWLENHKLNMSTEDGRNTVCSYAKDYTQMGNVKEIATIKLNKESDEGYADES*