Scaffold Ga0115007_10002516

Overview

Basic Information

• Taxon OID: 3300009441
• Scaffold ID: Ga0115007_10002516
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11262
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (38.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 78.8669
  • Long. (^o): -3.2286
  • Depth (m): 15

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032273	Metagenome / Metatranscriptome	180	Y
F054046	Metagenome	140	Y
F065688	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115007_1000251615	F054046	GAGG	MTIEITKEAAQKLIGNDEETWRDCKRDELSETSFYYGYGVHIQVIHNRVGNITQYYITDINA*
Ga0115007_100025163	F065688	N/A	MTIQEDIEHLNRHDSFNRFIDLIKQMREECIAEMHEVSTDKLQQLSGRILSYDQIMTIASWSETSSPE*
Ga0115007_100025169	F032273	GGAGG	MSTKGSGPRKGHNQDKQRKNYDDIDWSKKPSSPKTEQPKNKK*