NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115561_1255486

Scaffold Ga0115561_1255486


Overview

Basic Information
Taxon OID3300009440 Open in IMG/M
Scaffold IDGa0115561_1255486 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110512
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)653
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006306Metagenome / Metatranscriptome376Y
F050391Metagenome / Metatranscriptome145N

Sequences

Protein IDFamilyRBSSequence
Ga0115561_12554862F050391AGGAMKLKDSITLTETVDKLNKKNIKLLKQVKAHEEEVIELNEYIDSLEATIADYKRRFVPDFDMLAKGGESVPISDLKIMSDKARRSMAKRFLKKYGEEWVRINILENKDLK*
Ga0115561_12554863F006306AGGAMSKQDEIGKNWSLYYRNLYEPKIKRLTVRYNELYEENQKMKRRLEKFEKSKRMVLYYNK

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