NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115561_1232372

Scaffold Ga0115561_1232372


Overview

Basic Information
Taxon OID3300009440 Open in IMG/M
Scaffold IDGa0115561_1232372 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110512
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)693
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002430Metagenome / Metatranscriptome560Y
F016757Metagenome / Metatranscriptome245Y

Sequences

Protein IDFamilyRBSSequence
Ga0115561_12323721F002430AGGMTMMTLKLPKKQVNAILVALDTEIQYQFDSGGKPDWEYYPEMAAMMMAYYTTRCKFEE
Ga0115561_12323724F016757AGGAGMPKYEVRVEATTQRDIIVYAVSEYEAWIKAQIDMRGLVGGENTQVISSKEIDDA*

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