NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115561_1139475

Scaffold Ga0115561_1139475


Overview

Basic Information
Taxon OID3300009440 Open in IMG/M
Scaffold IDGa0115561_1139475 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110512
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)960
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030157Metagenome / Metatranscriptome186Y
F049044Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0115561_11394751F030157N/ARASAATGALHLSMEAIQNQGVNILGTGNLSNSDTEQTYMVRRDALDTISSTTTVAAIQAAIRLLNAGTPDKVTATISSATAADRDMGDTSVGA*
Ga0115561_11394752F049044N/AMAYSTTAVAGGKGNFSLNQNFEVEGVDVTLLTVDFIVDVSAETGDLTTGSTTAGLQMTRHAFEHHGLRILAEGPLVDSDTQKTYMVRTDCLDSLSSTTTVAALQAYIRTLDQSSSSFPGVTADLTGATVTETKIGILTANAVS*

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