Basic Information | |
---|---|
Taxon OID | 3300009440 Open in IMG/M |
Scaffold ID | Ga0115561_1079554 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1385 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005132 | Metagenome / Metatranscriptome | 411 | Y |
F006007 | Metagenome / Metatranscriptome | 384 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115561_10795541 | F006007 | N/A | QYEHKGALALYVRWNKERTKIIELKSIDPKGVRVSEPNDKGEVTHYIVRRSFGYGANSVQHNEPRKVKAFNKFDKSGTEALLYVANPYSGNPYYGVPNYISAFHYIASDFSFGKHIKNSAENGFTPKVLATFIGRNMSAEQKREEYKKFKESFTGAEADNFIVSWVKKEEDAPQFKPLDIANLDKTVDVLSRLNDAKILTAHNVTSPTLFGVMVSGKLGGTGNELVTAYQIFRATETLPNREILLDSVNRILGTVGYDAMNLSIVEEDINLESIKGANTTDISNG* |
Ga0115561_10795542 | F005132 | N/A | MVDVIFIDDNYLYQNFPLPKRLDRGALLALIQLEQFTSIQDLLGTCLYEDIEAKVVAQTLDATEQGLFKLVKYTLAMYSAKAAISILRTETARTKNEEGKQDQYILDTISTTIESKLSYINKRITNYILDNAAIKAIATADGCDNDLFNEEDNYQGSVFYPQDGITDQTCEDGGVSYN |
⦗Top⦘ |