Scaffold Ga0115561_1009456

Overview

Basic Information

• Taxon OID: 3300009440
• Scaffold ID: Ga0115561_1009456
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5426
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030770	Metagenome / Metatranscriptome	184	Y
F066915	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115561_10094565	F030770	N/A	MNNTQKPKITKPWSNEMYDWNDKVADLMKAEIKIQIEKNKNDWDKLNELVTLCGGIKFGEGYEIDELYDECLKELENVQNYWLNEEWDWSIKQGIVSDCVNIDFVGY*
Ga0115561_10094566	F066915	N/A	MNYSELNQMTIEELRNLNCMVVETIGNKKAMAGYEMKQSLYVGANVKVNHRRMIGKQCRVEKINRTKCVIKVLNGGGSYNVPLSMVELVK*