NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115561_1002895

Scaffold Ga0115561_1002895


Overview

Basic Information
Taxon OID3300009440 Open in IMG/M
Scaffold IDGa0115561_1002895 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110512
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11272
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (36.36%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032988Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0115561_10028958F032988AGGMENTNLVDKLNKIAEEFKVRLQRTARIDKTLATGKFANSFNTKVKDDSIEITSSVDYAGAVVDGASPARSSAGWESKKRNIESWIKAKGIRPYRRLKGGIKFAKTSTLKNSAYKSMVFAIMQSTSQRGTIKRFGYKGSNLFERVYKEIETKIGVDITEAYAEDIRTELRKIIQINNEQNIS*

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