Scaffold Ga0115031_1014500

Overview

Basic Information

• Taxon OID: 3300009439
• Scaffold ID: Ga0115031_1014500
• Source Dataset Name: Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5129
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine → Genome And Metagenome Analysis Of Marine Red Algae Porphyra

Source Dataset Sampling Location

• Location Name: Maine, USA
• Coordinates
  • Lat. (^o): 44.342
  • Long. (^o): -68.065
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023776	Metagenome	208	Y
F028401	Metagenome	191	Y
F036067	Metagenome	170	Y
F061490	Metagenome	131	N
F073006	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115031_101450010	F023776	N/A	LVIRSDEEPLSVEDVPQLEDSPHDAKAFSLRGGVVLLCSSESSAPISDRMKQFARFLLEEGTTNFFGACVNVDDELPIGLWQGEYRWAQ*
Ga0115031_101450011	F036067	N/A	MVYKPGASHHLPDFLSRASTVAPPDDIHDDTPCLALAETANGLMTERYTGTDKPEPVEFNDGVEAQETYDDCVAMTKRVELGTAKAFFRDEHHALYRRAPYGNQLVI
Ga0115031_10145003	F061490	AGGA	VIRPANSRFKALLDYRTYFLIRRQLTYTPEEAQRSHRLNKRLDGAFHGQQPFTGALPLGIFTLLTTIRRACDAAGLTHGQALPLMVFRLAGNAKMAFSGALNSTLGRQRYAIRTYGDAVNWLLSKYAIHATMANAYQDIITMKQQDNEAPTAFGHRVETQCDLLNGLFDIQDVMDIFITGLSDLVQAHVRVLNDQFPDRTLSETVATAQMYWDGTNKLR*
Ga0115031_10145007	F028401	AGG	MRYSFSVLPANWMAYAEKLTTLPRILDANNNRLVTKYDIHLYVDTGGVRLFDRFLISDNLSVSCILGTEFIEQNIEGIFPRLRKIVWQEHVRCTEELPRPTPILACLNDSAWDRHWQDRPARVRA*
Ga0115031_10145009	F073006	GGA	MLQSIHVLVVHVQLPGAVNVSEVLDLIGEPRALFQVEGNPGFAETVKSRVNVSDVLFLVSGKMMTSSK*