NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115559_1079164

Scaffold Ga0115559_1079164


Overview

Basic Information
Taxon OID3300009438 Open in IMG/M
Scaffold IDGa0115559_1079164 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110506
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1324
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025261Metagenome202Y
F102784Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0115559_10791642F025261N/AMAVPSVTLPALECPDVLLPTPANLSNLFGGLATMSYRYPDELADLKAKLEQIEKDILDIYNPKWEKIDIPEKKWDIMMTRLAAEYPMYVQKKILELINSLFPIEFNVTILGISIDILEFLEDPSSIRDSLELEEIDSIYDLIPDEYKVWDKFETADFKKESVINYIRSEVAKKMNLLLHGGFTGLIDLFDEIWDALGLPSIPALEELDLEALIRDKTTEELESISIFGYSLNDLLGGEFDNNVDIDEYNKERLLKRAREFAEEWQTYLIKKWMEKVTSFFDAIGLGALTQWITFTFCDFLTIIGFPTTIDLPPSIQTAIASTNSLTVAESSS*
Ga0115559_10791643F102784N/AMAGLYTGDKQITGKKQTQVVSKKKPWSDLDLSLKIHPIRKDIIPLRDDAAIKNAVRNLL

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