Scaffold Ga0115559_1066451

Overview

Basic Information

• Taxon OID: 3300009438
• Scaffold ID: Ga0115559_1066451
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1489
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → Pelagivirus → unclassified Pelagivirus → Pelagibacter phage HTVC031P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002485	Metagenome / Metatranscriptome	555	Y
F072524	Metagenome	121	Y
F080519	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115559_10664513	F072524	GAG	MSIKGTALEYFTIKINNGFTVEELAYLILGWEDNIDKIKKIKSYSKLMTIAKKQLIDKGLIFLENAWESLDYIDNMEDVHRQVMRHIKDVEPTKYLGKTKDEIKQIKLEKQFIDNMNVINGIK*
Ga0115559_10664514	F080519	AGGA	MKQCKICDDKPQEIWSQSGYTYICKPCMEIHHDTHHEKIGTGKYPKNYIPSDYYRLIDNT
Ga0115559_10664515	F002485	N/A	TRLLRTTKNLYSEIVGDKEIFYSYNTTVAVKTPIETYVSENVWSTTTGRHLTWIEQDTNTDREYRMRYKDFRNFCINNNVNKFYR*