NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115559_1051340

Scaffold Ga0115559_1051340


Overview

Basic Information
Taxon OID3300009438 Open in IMG/M
Scaffold IDGa0115559_1051340 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110506
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1773
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024922Metagenome204Y
F034710Metagenome174N

Sequences

Protein IDFamilyRBSSequence
Ga0115559_10513402F034710AGGAMNTNKIVCTYCKSDKITYLPDVFGQSWVRHHYIQNSKTGKFELKATGSTPKKNDDTDNVNVINRSVINWNDSRPFFSCEDCTAELDGYNDIDYKEINKDGE*
Ga0115559_10513404F024922N/AMNTNELEKNRLLTKKDFESFFEEHGSPRIDKTNIDELRSTFGVTHLIDGKYKDMRGNCFKCLTPLRADYTKHKNYCMDC*

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