Scaffold Ga0115559_1051340

Overview

Basic Information

• Taxon OID: 3300009438
• Scaffold ID: Ga0115559_1051340
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1773
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Xanthomarina → Xanthomarina gelatinilytica (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024922	Metagenome	204	Y
F034710	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115559_10513402	F034710	AGGA	MNTNKIVCTYCKSDKITYLPDVFGQSWVRHHYIQNSKTGKFELKATGSTPKKNDDTDNVNVINRSVINWNDSRPFFSCEDCTAELDGYNDIDYKEINKDGE*
Ga0115559_10513404	F024922	N/A	MNTNELEKNRLLTKKDFESFFEEHGSPRIDKTNIDELRSTFGVTHLIDGKYKDMRGNCFKCLTPLRADYTKHKNYCMDC*