Scaffold Ga0115559_1005437

Overview

Basic Information

• Taxon OID: 3300009438
• Scaffold ID: Ga0115559_1005437
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7505
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (86.96%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035970	Metagenome / Metatranscriptome	171	Y
F055213	Metagenome	139	Y
F064107	Metagenome / Metatranscriptome	129	Y
F095340	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115559_10054371	F064107	N/A	TFDISDELLDKLLTVMAITSQQNALQGAMPMLMGAMGGKTPPPPSKGEEKPSMGFKMDDKK*
Ga0115559_100543715	F055213	AGGA	MGMGTDKLGEIMSHYGNQTPQVGDLYVSETQGRLHILVSFEIADFSKYYRAKLKRIDDGAITSWTKPQHEFYRKYKPLRPNPQA*
Ga0115559_100543722	F035970	GAGG	MDNNWNIIMKTAKELAQEYHKEGWTGDCNDFTQASSSVSQELTNLEVERLWDEFSNGEMIAEGMTFTFHRQGRDKVITIEQTDNN*
Ga0115559_10054374	F095340	GGAG	MNFHIGDLVKIEQGQGKNDIGIVLDYRSTGRFYPSIELTIKLPCGRTIRKDYKTVEKLGENNDQETTEEKK*