Scaffold Ga0115008_10890600

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10890600
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 657
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → environmental samples → uncultured marine bacterium 580 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002915	Metagenome / Metatranscriptome	521	Y
F004166	Metagenome / Metatranscriptome	450	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_108906001	F004166	N/A	MKKLFLLFFLVPLISCSDHQENDSWGSYATNKETQKQEFWFTSYKTREECIADMSWQLEGEDDPNKKRISNLHTKPYGCHFMSNNKWLSMYYYLVYKDEGLGCLWESSNPNVRIKYSVTLMTFVIAPEQGRCILGD*
Ga0115008_108906002	F002915	AGG	MKGLFLLSLIIPIIAQGKEVFTNDQGLKIEYVKPSVSCFYDKEAYEGYLNTCLMLPNYETCAQTKYENYICSDENMI