Scaffold Ga0115008_10259552

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10259552
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1236
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025385	Metagenome	202	Y
F035970	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_102595521	F025385	N/A	KSTDDQVIKSFMNQETNKSRTLRTDGQSLWSFDTRIAEHIADGQGQGATIVYDYTYGGGHYVSQTTSNHVRLTKKEVPRPNWMNVDEAKEHGLCPLVESRHDASRQS*
Ga0115008_102595522	F035970	GAGG	MDKWNIIMKTAKELATEYRKEGWSGDCNDFTQASSSVSQELTNREMETLWDEFNNQELLTDGMVFTFTRQGRDKIISVKNCPSK*