Scaffold Ga0115008_10088985

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10088985
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2309
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000754	Metagenome / Metatranscriptome	906	Y
F049611	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_100889851	F000754	N/A	MNFSINNTDFSRDVAVSAKVDGEAFGWRGGYVLNDTVTTGQVRNRPVVTFTNNDASSVDLEVAIFIGG*
Ga0115008_100889855	F049611	AGGAGG	MPLVKKNITLAAGTTSDQILVGTPYEYVSQNTQLVVAAAESTGTYSGNLVMNFSINNTDFSRDVAVSAKVDGEAFGWRGGYVLNDTVTTG