Scaffold Ga0115008_10037671

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10037671
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3812
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y
F080057	Metagenome / Metatranscriptome	115	N
F088304	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_100376711	F088304	GAGG	MGIVTNNRRAAQADKDFNLSFSEGHEIKVQFNCEVLSGCEFKCKGCFVNKLGSNMGSYDRLNNAIDLFNNNGYRVSTINIGPTDLFGNNNVIELLQDETFRECLSKVSTIQFVTTLTNISTDVIQLLNSIPKIDGFMYDVNIALQPPVDWDWVEERLSLLN
Ga0115008_100376712	F080057	AGGA	MLNNDWKDIVSGGGIGEEFTSIDSMKQYKIQVNLEILEGCSYMCPGCFVKRRGNWNPKSIALFHELAYELKDRNDVVLDDIVIGPTDFYGAENLIDIINNPRLADAILMMPEDNRNIQHNCSILGSLSEKDIQGKIKAIEESPLGKVVEAWDVQIALDLNRLMNDPEYLNALDERIETFKNSSLNFEISMATNIVQGVEDILYPAIDFVRSKYETVIEVLPSVVRSFNHSAKHGNKLFEWNDMLSRLAVDPHRFKNKFHFLQGDVSHKAFHYSVVSIYHGDMYLSPFIYENAQIHTDDFKVDDSWHWLPDADIYDYILKKKDEVVVSQMEKSGDKECGSCKYLNICVNRMVPMIMDTVFDGRKECILNKDVIALFDDEVYHGNSY*
Ga0115008_100376713	F042906	AGGAG	MPLIKNNLYYEMTTETQTKPVSAVKIQLDVLDGCHHKCPGCFVHRRGNSSDPHQLEEAKQFIKTITDQGILVDEMLIGPTDFLASENFYEVMPHLLDVINENSPILAFVSTLIDGDIKKFCQFITDNINLDTEIEIGIATNPHKFFNEDYIQHVSEILDYIDKNLQHEVTYTFVVNIKDYGLDYEELHDQAVKRFDTILDFIPSVSRSHKANIILKTLDEFNEYFSTWHRESKLNNIMVDHSHGGMNYTVLNYKKGEWYLSPFMYENMAIYHDMFKVDNFNSVNGMVEQQIESAKGTECENCPLFFSCYNRKIIMLRDYLGVDRCIAPKENMLNNIHNYNAPAQTMYQWDGYSVENDKQGYRKKFLVTTDDDPELERIKDISYVK*
Ga0115008_100376714	F042905	N/A	MCPGCFIPRKNLTKADNLETLYNLLIGGSYHPDEITIGPTDIFDAENFSEIMSHPYMEKIYGISAIGFTSTLTQPYLLVKEKLAVIWGLYKHIHRVPDIDFKIVLDIDKYLDGDLDSFYKNLELFEFGSVQFRVNYHKDVFKRIGYNELCQRVFDDFNAPVIITPSFLTDRNVRGKVTQHLENFRREMLEQKIDKKWLNLYTFFDAKFNGFGCQNYSFYNNKLYLNPFLYDVIIQRTPQFETTMDANTLYDNIEYAQQVDDCNGCEFMMSCAERNVHLYMESRGLDSCVALKEYMYASD*