Scaffold Ga0115008_10007330

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10007330
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9099
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017636	Metagenome / Metatranscriptome	239	Y
F017822	Metagenome / Metatranscriptome	238	Y
F085651	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_1000733010	F017636	N/A	MNNYMSRLEKKAQEEDNQKFASKKLGFFIYVPCLIPIILAFFLLVIGMASEASPYIVMGSLLALVCGSLGQMREKIIQQNQAIQILQEKLDEVSGTTD*
Ga0115008_100073305	F017822	GGA	VNIYIPFTILCLFFLGCAGSPTTGIKPYSWDDPYWKAENYQSKDPESVLLTEGDLERNYREVARIYTEGGPKNKEEAFSLMRSRLAEFGADAVIKVREKKNKNFEGIVVLFD*
Ga0115008_100073309	F085651	AGGGGG	LFSKKWEATYLGEHFVVINNWFSGLKIYHNGNLVGQSNQLVVRNKYEPFTSVTVVGKKDKLLVEIYGYSSLFSFKFHIKINGDFVAGDKF*