Scaffold Ga0115008_10004548

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10004548
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11518
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011588	Metagenome / Metatranscriptome	289	Y
F080120	Metagenome / Metatranscriptome	115	Y
F097453	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_1000454814	F080120	N/A	MEIKMFKFYRGTCQREANELAQDVQTREVSHWTDSYENAAKYSKGAVIEVEMDELPPHFNQYRSICEGDAVHGTFAQWVLPRAYFETTACNFVEEVRVHNH*
Ga0115008_1000454820	F011588	AGGA	MEKPFSKAFVMRTTFRHMRRSVDISIRKSFDRFKDFDSDSKTGKEIMATLSVLHTVRKMLDDFQEQNSSLFSEKDKLN*
Ga0115008_1000454822	F097453	AGGAG	MYDLILRDIENVLGSASWTSNNIKTYPVNYQGTKGSNNEYVLLNVLPSSSENYAYGVTKQVEGLVAVKMFVKAGDGQGRLMAIANLLDTVFDNKTLTNGTKLGTSYLTVEGLDPSNKSLYSASYIIPFTHYGEQ*