Scaffold Ga0115008

Basic Information
Taxon OID	3300009436 Open in IMG/M
Scaffold ID	Ga0115008_10000676 Open in IMG/M
Source Dataset Name	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009436 Open in IMG/M

Scaffold ID

Ga0115008_10000676 Open in IMG/M

Source Dataset Name

Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26328
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (78.79%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

26328

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (78.79%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location
Location Name	Fram Strait
Coordinates	Lat. (^o)	69.2303	Long. (^o)	7.7302	Alt. (m)	Depth (m)	10
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Fram Strait

Coordinates

Lat. (^o)

69.2303

Long. (^o)

7.7302

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002688	Metagenome / Metatranscriptome	536	Y
F024091	Metagenome / Metatranscriptome	207	Y
F025393	Metagenome / Metatranscriptome	202	Y
F077304	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_1000067627	F025393	AGAAG	MAGLKSQYEYRIQYEQQYVQEETIPALNTPEDCHKYAMFVKGNEHFDNGRTYVFKDEFGKYVSTFVSQYSDIMEKNLEPGVRDAVLALQQKGYLTFTSCQGHADSKHRYIGVVFNDKAQKGQFMHEMKDLRCDIHWYDNTINSEERPCKNIPWWSEGGITLHIVYDDHNYDNMSQMERREKPYTDEELTKFWNIQMWRNYKHYECIVFSFGYPMVEKSIWERIHKYFFYNQFKVESAYKDFLLKVDKLTEYLA*
Ga0115008_1000067628	F024091	GGA	MSKIQEKLNSIMDEIQALMESHPRAHLEEGTKIHELMNKVSIYFQHMDDENRDYYQYVQMAIEEEREWRV*
Ga0115008_1000067629	F002688	AGGA	MDQEPYHNKGVGLAFLIIALTMIGLPVVIGTSMGWFNLFGILGL*
Ga0115008_100006764	F077304	N/A	MTDRQRNNGLVNPADPEADAVTKIILEDKRPDIGEIELTLFENCHLNCFFCHHDKKSTVGLSREEIFSKLTLVEDHLIKMKGRADVVQINMVGGELFQDRISEWAYPVYYDFLLAIKKLYDKYDHNIKVVWVTSFQFAKRDRVQKLIDDLNAADIPSYIICSYDFDGRPVKGPYGKNIEYFADYITSINMVATVPSIEKFMEDKDEYFHYLYNKFDNFYFDDYIPDKGFDHLIPSDSLYLEFLKFVYHNYPDINPMKDLISKDKNHMHCLSLNKVTIFPDNSTSNCRWDRYTPEDFNTPLHRKDNASMMQAYMDEHGCLSCKWWNKCGFRCYTQWDWKNRERDLPDCIMRMWFNYMEKNKL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0115008_10000676

Overview

Ecosystem & Geography

Associated Families

Sequences