Scaffold Ga0115008_10000234

Overview

Basic Information

• Taxon OID: 3300009436
• Scaffold ID: Ga0115008_10000234
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38760
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (18.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010163	Metagenome / Metatranscriptome	307	Y
F019658	Metagenome / Metatranscriptome	228	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115008_1000023429	F010163	N/A	MLLLKIANKSSSSHNHIISTYTKHLLHSNKMLKFVTKETLSFYVR*LLLLIFINVYDLKSKANYFVSYIDVSFFNNHKLISYILNINLSSTNTIINVNNIKGNPKFFYSAGMFSLQKKQKIRQPKAIITILRSLLLKSKIFKTKPVAVHFNNLFFNHQSHIFKKLKQKIFTKLFVSYLYRSHNGCRLKKKKRIKIRTRTRKL*
Ga0115008_100002348	F019658	N/A	MKTKKVRNPNFKLFKYNLLKLQIYSDKPFFDSINLSNNILEQIEVYLKQVLKVIFEYHV*QFKILFIGFPVVSKIKQMKLVHFTNHDFITEKS*ITGIFRNRFSILTYLKLVQSQNFSKSINLLLTVKTKPHLVVVFNQTIENNLINEFYKAGIPIIYFN*DCLNKFKMAYKILGNFNFVEKNIKLTFFFLFYSLLKKTPLKKRKIIKTLGL*