NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115546_1217406

Scaffold Ga0115546_1217406


Overview

Basic Information
Taxon OID3300009435 Open in IMG/M
Scaffold IDGa0115546_1217406 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100413
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)659
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001702Metagenome649Y
F002146Metagenome590Y

Sequences

Protein IDFamilyRBSSequence
Ga0115546_12174061F002146AGAAGMIKNIFNFLDYVLFLAMFYIVYLGLKHGPQIEQLIIELKRGVI*
Ga0115546_12174062F001702N/AMKGNTMNKEQKQIKKVIDEAFSQLHVLSNITWTPYRDEIFNMNKKDEKRHRYNRPSSDFESSINDCAKMFTVKHIAESLLNVEKWKVKDLLRIKKSCLYSQSVVENYRDRIVDAWKDQDIKYLSNLDYISLIDWKHYTEILERRSA*

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