Scaffold Ga0115546_1138291

Overview

Basic Information

• Taxon OID: 3300009435
• Scaffold ID: Ga0115546_1138291
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 864
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004988	Metagenome / Metatranscriptome	416	Y
F015532	Metagenome / Metatranscriptome	254	Y
F030928	Metagenome	184	Y
F083388	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115546_11382911	F015532	GAGG	MTLIKENKTVRKEIPNRMMSATFALPIDGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQM
Ga0115546_11382912	F030928	GGAG	MREWLKTLESYISFCILGFTIFICVIVIIVNCRYIIKLENTIETMWHEIVQVKETNIGLYQFIEEHKNDFD*
Ga0115546_11382913	F083388	AGGAG	MVGMLMQKRIANIEWVMKRCSPDFKPVWERKLEQLINRRVEMAYERMVENARIVH*
Ga0115546_11382914	F004988	N/A	PRCNGNGYIVVQNEDIDCPMCEEDFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGE*