Scaffold Ga0115546_1021188

Overview

Basic Information

• Taxon OID: 3300009435
• Scaffold ID: Ga0115546_1021188
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2747
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium TMED104 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020627	Metagenome / Metatranscriptome	223	Y
F091003	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115546_10211884	F091003	AGGAG	MENNLYRMIKLLELQLVKTDLADAWLRRIWQDKINELMLKVTRLPR*
Ga0115546_10211887	F020627	GGAG	MSKPLDQMSTQELKLAWGKRAKDFLVGKKIVDVYYHSEEENEEIFGDMDERTNIKIVFDNGHWITASRDDEGNGSGVIFTTDPKLSVIPSI*