Scaffold Ga0115546_1010764

Overview

Basic Information

• Taxon OID: 3300009435
• Scaffold ID: Ga0115546_1010764
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4232
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F022999	Metagenome	212	N
F030599	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115546_10107641	F030599	AGGAG	MRLAIVIDVDGDIMYVPEDSSAFKNYPKPRLFDNLKDAQEECAKWNTGVVVDYNTNRTVDEVNSYSDIRPFNSDERNRAKERKDTN
Ga0115546_10107646	F022999	AGGAG	MMWILVWMQLVTNQGVDYYQLGNYGKEAECQLALKEAVVLVNHSSETLACLEVDTR*
Ga0115546_10107649	F005813	AGGAG	MKLYKNSNGVWAGTQADARKMCGKTYSTVDVPVDKPSLLMFLNANKVGSGVISDVQDITSEATELNTGAMSWIRWSYDCMRRGQYDDAKEMLRKGLELAKKEKSNGDI*