NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115562_1244906

Scaffold Ga0115562_1244906


Overview

Basic Information
Taxon OID3300009434 Open in IMG/M
Scaffold IDGa0115562_1244906 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_110516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)627
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015346Metagenome / Metatranscriptome255Y
F021674Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0115562_12449062F015346GAGMEHKLYNVGELVAVASNRVLGIITKSNYWALDEYLGGEIEFVDVMFGSSVSRQYPVRYLAEL*
Ga0115562_12449063F021674GGCGGMERETYNTRLKTNPEDIPLGSLLRVKKHCRKNITIRNNGEYGILAPCDSGKYITHDVLFPNGTRCIYMPLNWEVVSYAR*

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