Scaffold Ga0115562_1244906

Overview

Basic Information

• Taxon OID: 3300009434
• Scaffold ID: Ga0115562_1244906
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 627
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015346	Metagenome / Metatranscriptome	255	Y
F021674	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115562_12449062	F015346	GAG	MEHKLYNVGELVAVASNRVLGIITKSNYWALDEYLGGEIEFVDVMFGSSVSRQYPVRYLAEL*
Ga0115562_12449063	F021674	GGCGG	MERETYNTRLKTNPEDIPLGSLLRVKKHCRKNITIRNNGEYGILAPCDSGKYITHDVLFPNGTRCIYMPLNWEVVSYAR*