Scaffold Ga0115562_1010852

Overview

Basic Information

• Taxon OID: 3300009434
• Scaffold ID: Ga0115562_1010852
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5221
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019141	Metagenome / Metatranscriptome	231	Y
F027157	Metagenome	195	Y
F029431	Metagenome	188	Y
F063588	Metagenome / Metatranscriptome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115562_101085210	F027157	GAGG	MTYAEFKKEHDKLVTDIIFTESKHSDTLVERLERLRLDNEKHFNRLWADL*
Ga0115562_101085213	F029431	AGGTGG	MNSAKRRQVRREARREARNNLAVEVFGWSVVILGAAVTAKFMYTALVYIMLF*
Ga0115562_10108524	F019141	N/A	MASKKLWSIGTMSKIKEQLIGYEQNDWISNDDHVRVDEVTEYLLYAMSVAEMQQAAKQHIQHDLYTMARSDFEKVHYDTIGVHTK*
Ga0115562_10108525	F063588	GGAG	MQFNIAGMFLNVEPRFGIGLDIESVESRPVWTVKDGELGTMAFDGLVLLLPFFIVTLGNVWTEVDE*