Scaffold Ga0115562_1009201

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115562_1009201

Scaffold Ga0115562_1009201

Overview

Basic Information
Taxon OID	3300009434 Open in IMG/M
Scaffold ID	Ga0115562_1009201 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5789
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (18.75%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046384	Metagenome	151	Y
F056147	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115562_10092012	F056147	N/A	MNISVKINRYKDQTEFYELKLSTYKDTIEGKFSKQDLRYLIQQIDNEII*
Ga0115562_10092017	F046384	N/A	MIKNVNFKIKKMKNQPIHETVRDLYTFKNMQIDALQRELCKANKKITNLETFIFELCDEDCPIAYKDIVKKEVLNDNTRD*

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