NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115545_1213573

Scaffold Ga0115545_1213573


Overview

Basic Information
Taxon OID3300009433 Open in IMG/M
Scaffold IDGa0115545_1213573 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)655
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018009Metagenome / Metatranscriptome237Y
F033025Metagenome / Metatranscriptome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0115545_12135731F018009N/AMALFSASDFTGFTSTFAVPSGISDVLFAGSVDLILSTGITQQVFDTLSTALKCIHYMEANKLYSLSPNEDVTILNLRSKLLILENTYINQKMMNSYVFTYHGNQVQAIHRSMADMVSLSEALSSVGFRCIGLPWASGINPKLQEN
Ga0115545_12135732F033025N/AAELITIPKKQTSKAIKVKSLNGYDAIREKLDEGTTTNPVKTPVEQPRPPKTKVSIGL*

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