Scaffold Ga0115545_1096534

Overview

Basic Information

• Taxon OID: 3300009433
• Scaffold ID: Ga0115545_1096534
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1074
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F003073	Metagenome / Metatranscriptome	509	Y
F007346	Metagenome / Metatranscriptome	353	Y
F016757	Metagenome / Metatranscriptome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115545_10965341	F003073	AGGAG	MAKKLENMTQDERIAYWAAQREKEHIQRRDRIAKLSLDQRVAVIKVYQLLDEILDTALYPDMGGIKAVTAYDLQELADAKDRLRHQFNFDIRQHG*
Ga0115545_10965342	F007346	GGAG	MTSNEIKGIQLSQAVKWSGQDIFEVASAAFEDANYHSFNEVFYAAWTEFQKELQDG*
Ga0115545_10965343	F002733	AGGAG	MIKSDKIWLQLTRNEANAIMVMLDGEMENTHDVAGIDLSDWENLDLEAYKLLAFHKFKTWYMENCNDE*
Ga0115545_10965344	F016757	GGGGG	MAERTWEVKVEATTTREVIVHANTEYEAQIKAQIEMVGLVGGENTKVLSVKETTDD*