Scaffold Ga0115545_1071760

Overview

Basic Information

• Taxon OID: 3300009433
• Scaffold ID: Ga0115545_1071760
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1288
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007537	Metagenome / Metatranscriptome	349	Y
F022462	Metagenome / Metatranscriptome	214	Y
F089527	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115545_10717602	F089527	N/A	MNKKSPGQGKTPQQYTDSTRFAWYGVVGMTLLVILLSLLGGCTTTQPTKKCCEKTHVITEWDGDRQINWYSSTEKK*
Ga0115545_10717603	F022462	N/A	MRKYIRSLEIPIYLLVIALFCLENGDKAIAAFLLIVSIGRLIINVITDEAIYKR*
Ga0115545_10717604	F007537	N/A	MKQFIKDKVMKKLLYLMVVGVIFTSCQKDEFEIDRNYQFKMNGRTAQDVNGYYHLKLDPTEDKQTLHRFGAYVTNRDAYNLPSQVIWRCDAFWYTPDTLGHTYIEIGQVPTGESPWSWENFAVTGYGGMTVPIVNGTSYADPAVDSVFCMMAPIGAMVGDTVTIYGKAKFEEGDI