Scaffold Ga0115545_1048190

Overview

Basic Information

• Taxon OID: 3300009433
• Scaffold ID: Ga0115545_1048190
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1647
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium TMED56 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026714	Metagenome	197	N
F043623	Metagenome	156	N
F054920	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115545_10481901	F054920	N/A	DHYKKIADEGVEFYTCDDDDLDKEYGMYYGNLDFDPLEIMAFRSGHTKMFYKENGKWQLL
Ga0115545_10481902	F043623	AGG	MFKRIKKTEDDPSLKEAQTFVKGWVERVVLSTGVLLVDEEATYKQGIKKNKAASFLANKDGYREILGPAIFIPHEVKSEWY*
Ga0115545_10481906	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFDVMAIRKEQFPLLHYTITLISKRLEETHNRMITDVDPNTCDPSTLHLNSQTIE*