Scaffold Ga0115545_1041493

Overview

Basic Information

• Taxon OID: 3300009433
• Scaffold ID: Ga0115545_1041493
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1804
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002733	Metagenome / Metatranscriptome	534	Y
F049286	Metagenome / Metatranscriptome	147	Y
F050370	Metagenome / Metatranscriptome	145	N
F077246	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115545_10414932	F050370	AGGA	MYQHEVYIPCAVGRQTFEDAKTLLTNIHGGCTAYHSVGHWNNEGTNTDGTTNSVQMREEVWVVRVVSDDPTFSGLNLIEAELFKRNEKCVMSTTQEIAARFNYDNASVL*
Ga0115545_10414933	F002733	N/A	MKGIMMVESKTLWLQLTTTEANALMVMLDSEMESQFQYDSLDLREWETLDLEAYKMLAFHKYKTWYTRNCDNVST*
Ga0115545_10414935	F049286	AGGAG	MPKYEITRSYTVSCVATVEADSHKHAEEIALYDADVYWKEYDGDYEEDVTIEEIEKP*
Ga0115545_10414936	F077246	AGG	MDLSNNKIVVIPESWDDINNYIKDTFEHKAYATVLALMVENYTLHEFSKMSGYGFSEWKQEYLKNA*