Scaffold Ga0115545_1015069

Overview

Basic Information

• Taxon OID: 3300009433
• Scaffold ID: Ga0115545_1015069
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3277
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012087	Metagenome	284	Y
F016344	Metagenome / Metatranscriptome	248	Y
F062717	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115545_10150692	F016344	GGA	METTTEEKLNARFEAFKEETRRINRSYWASVRRANEQVKEIRQSYTAVYQCPVCGLLRPADHSKECTDLRPADISMMEKIHRKDYPSDYNWDHELT*
Ga0115545_10150694	F012087	AGG	MTDIELDEIRSDLKEIKEMMRIISKQVGSDQEVAAVRTLRRLEESRINQQIRQMSHLAD*
Ga0115545_10150696	F062717	N/A	MMKQLIEITKKKLGLRYDREIAEALNLTKSGFSQKISRGDFPFSEIRQLLINQGIDSSWLDAYETEMNKTESTITLNSEVKLLKEKERTITIQQSYIERLEKTIESLEEEKKKWIPAITPELINSPDNWQQTPM*