Scaffold Ga0115545_1009579

Overview

Basic Information

• Taxon OID: 3300009433
• Scaffold ID: Ga0115545_1009579
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4289
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028038	Metagenome / Metatranscriptome	193	Y
F029926	Metagenome / Metatranscriptome	187	Y
F074171	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115545_10095795	F029926	N/A	MRLDQVVKPNSKVMTKLAQDAIDKITLDASKGKFQNDRSGYSYKSDTYRKYKANSMRGKNGKLKAFANQSTDTQTSFVNMKLTGRTLRGMRGSGKTDTAIITYDRGEIVLGNQKRGYDIYDLSNKNKEFIAERFSKELLDRNIKKYVSKTTIIK*
Ga0115545_10095796	F028038	AGG	LANLDFYNKEIENIQQQLIDKLDNLVVGLGKVTDTELMQIAKQIDFFAEMETLGFTKLMNRVGKTFDDEIARVFAELSKRELGQVSAASIDALRELKNFEMTYLTNGVRQYSDQLKTAMLRGIITGESNIQIMNNINNTFGVGTYISSSETSFLINDAFSRFSNTSRAKAFEEFPEVKFQYIGTSDNKTREVCQRALQEPPLTREEIDALGYVDFANRGGYNCRHDWVRV*
Ga0115545_10095797	F074171	N/A	DLVDGMRSINIMLTELALHGRMQLGQPVFLNLDTEQRITMGQDKALVLPEGADFQYRTPNANVQAMIESTKYMVDSIAQSNNVRINWADKSQESGLSKKMSELDLMDALRSDTEQIYRPFEKNQFQIAKRICEVSGGINLGDQFSIDFAEREVPMSTDEEIKYYSWAFQNDLETRQSYLRKKNPDFKEEEIQAIVEQIDAEQPQEADETQSIIDRIGEQVG*