NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0115545_1004372

Scaffold Ga0115545_1004372


Overview

Basic Information
Taxon OID3300009433 Open in IMG/M
Scaffold IDGa0115545_1004372 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100330
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6655
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (21.74%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058912Metagenome / Metatranscriptome134Y
F093690Metagenome / Metatranscriptome106N
F100396Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0115545_10043721F100396N/ASLNQKIVNCFKDRTNNLVTYINSGKKYHLFKESWKMAPKISNGEVMIRLDDDDLLTSDCLEFVNKIFTETPDLDFAYGNSVLFRKDSLFQIMETKTPIDYPKSRDTWSGYIKGHPYNKPWSFTKNHFDKPRHASSIIHSSKLNHFCIFHPYMMRTKSVLKVVDKINMTSNFVDDLEFLGSLDNLGLRYASLKRVLTYVRKHEKESITEDGKEINGVTLWNDIMRVRDDVDFLRPDGLNFKSNITKIKVKYNYSTQIDSEMKGAFKNLLSNIDNILNPKPTFSDKFDWRRF*
Ga0115545_100437211F093690N/AMSRTKNLLDGLDLSDGELEQELYLRNDFDYQWESYVKSEDYANMINDEISKLSKIYHQFDIANALQYASEGITIQPEEVGKELYDTLFSEKVLEYLNKQND*
Ga0115545_100437223F058912N/AMGLKEKLAKKILEMKLNQATKHMSGVIQKLQQQFDDL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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