Scaffold Ga0115545_1002596

Overview

Basic Information

• Taxon OID: 3300009433
• Scaffold ID: Ga0115545_1002596
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8891
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015933	Metagenome / Metatranscriptome	251	Y
F016739	Metagenome / Metatranscriptome	245	Y
F028800	Metagenome / Metatranscriptome	190	Y
F035084	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115545_10025961	F015933	N/A	MNKTKENLEAGMYFSFKKHKLYSYTNDVYKVETTNNGYMTLHRYHIHSKTGEYIFTDLVTVRRIGDNSLDYYKFDMFGKKTRGRIHYANIDSFFYAMKGKDGKEYTKIEKALVGNEEYIDYGSIKKLV*
Ga0115545_100259613	F035084	N/A	MAKVRKGYDAQDRIIARFRRDAKASTNNSAVAKAMRNKKSLKKQKDEDVVFSPLALIQLQNG*
Ga0115545_100259616	F028800	N/A	MNKIEIIGGYDGFEREVTGTYDLDGNNVYEWTLYTYDGFTSIHFIDCEAEFNLEDEDDCLEIGIENGEEIYDEILDFVNDNGYDFIGEEFE*
Ga0115545_100259618	F016739	N/A	MKLNGGLLSEGTSEYVKLRKAWKAWNAKCHPEDRIDWEDYYDEHKK*