Scaffold Ga0115005_10042941

Overview

Basic Information

• Taxon OID: 3300009432
• Scaffold ID: Ga0115005_10042941
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3471
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean
• Coordinates
  • Lat. (^o): 79.0225
  • Long. (^o): -9.5247
  • Depth (m): 17

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004489	Metagenome / Metatranscriptome	436	Y
F031863	Metagenome / Metatranscriptome	181	Y
F071647	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115005_1004294112	F004489	N/A	EAINNVRTSVQGNDPRTWMKACAIETLLKGKSGNHFKACLIRKMESTKQHIENPQGYADELYNKIKGACSN*
Ga0115005_100429412	F031863	N/A	MYWAKDMIPMNGMLFVVKRRFRHEPFQKVINHFGSKTVCENYHCETVIKGGDGFFYLCDKVDDARLV*
Ga0115005_100429416	F071647	N/A	MTLRKTISKSEFTKSIESAKSNPFNAVRKPSTSKYVMRGGIPHKWVDGSLVSLTKLSK*