Basic Information | |
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Taxon OID | 3300009428 Open in IMG/M |
Scaffold ID | Ga0114915_1043671 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1474 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | South Georgia Island | |||||||
Coordinates | Lat. (o) | -50.35 | Long. (o) | -39.82 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F038862 | Metagenome | 165 | N |
F059448 | Metagenome | 134 | N |
F066148 | Metagenome | 127 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114915_10436711 | F038862 | GGAG | MSDKAWHISYLSAIIGPCAATTDDGCMAWEDEEKSDFVMRLLDRDNDGKNLLVVIQPEMNELAMYTLTGYCVANSLPYMIKDWDALSEEGQKEAQKTRH* |
Ga0114915_10436713 | F066148 | GGAGG | MSNHLSEVAEGIIQACPTQLNPDEMSTLIAYMVWSYGMQGDWDDMLPKIVRCINLDEGHARIVRVANRDANKFMDKVLGDISNARRS* |
Ga0114915_10436715 | F059448 | AGGAG | MTDTGFKTIIEVIAKGSWLTDLEVAERAKMKLDAALYYLRRLRRLGLVISEWVHG |
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