Scaffold Ga0114915_1034229

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1034229
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1719
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010277	Metagenome	306	Y
F024420	Metagenome	206	N
F050005	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_10342291	F010277	AGGAGG	MSNALKDKLLEVELFVGEKLKDLTNDQVIKEVRKEFGLQMFVDHAEELLHEFQQDINFERSQSW*
Ga0114915_10342292	F024420	GGAGG	MTIYEELRKIIDSNSCWQEEGRKFELLWNLILSSDKRSFSEYFEEEHNIKLYDAMSFKEILILCRDYNVGGRFK*
Ga0114915_10342293	F050005	AGGAGG	MKNKTNYPLFHEFKIMKIGNVLFNISVDDIIDQEIEETIIIINQLKDINQFVEV*