Scaffold Ga0114915_1019849

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1019849
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2422
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000613	Metagenome / Metatranscriptome	985	Y
F003678	Metagenome / Metatranscriptome	474	Y
F063773	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_10198491	F063773	GGGGG	MGQEFTINSAAIEAKINSLLPSQGGYGAGVDFSASTMIIPIIDLTETA
Ga0114915_10198492	F000613	AGGA	MPLVKKRLSIAAGATSDQVLAGTTYEYVDPGTRLVIAAAVDTVGSATADTTLNFNVNNAEFARDASVSALVTGEPFSWNGNYVMNDMVTQGAVRNRPVVTFTNGTSGTRVVDVAIFIGG*
Ga0114915_10198494	F003678	N/A	MDQFLLYGSFFIASLSLILCFYACSRVGSFIQASKGLDWDTIANITGDLATIKKTIQTLNNRLNGMNSPKLADQELMLQLLQKQPKQAINGNMSNVGG*