Scaffold Ga0114915_1018492

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1018492
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2528
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009699	Metagenome / Metatranscriptome	314	Y
F019909	Metagenome / Metatranscriptome	227	Y
F020259	Metagenome	225	N
F024582	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_10184922	F019909	N/A	MTNFEQHIGQELPQAIIAHLNNSSIEMLTKQAEKLKFDSWCPLSMEGDSPELRKQLKESSDLLFQWIGFQSVTK*
Ga0114915_10184923	F020259	GAG	MTSKTFTAVADWAERIQTMAQENNLINAQDIVHDVFGMLRDDEHFLPRL*
Ga0114915_10184925	F009699	N/A	MMTNKQALAFMQKVDSSAPFWKELHDENRPTMNVEGTPTPRCLYNLMLTRRDVNLYAKIDMKPHRGWKIGDVKAYFGLKGGKQKIADAINAIHDELIGRLEKENNDDD*
Ga0114915_10184927	F024582	N/A	MLPTQNLSLMKSTHTTLTSLLSAWDKLEVIGTNPDKHKSILTETNIHEVSRRIAIEYRHELNNGGGYPYIVCYLVMFDENGHRRGVTNNGSWGCHGEEILEFKKWFQLKTREAATLEEERIDITQDSIADFLA*