Scaffold Ga0114915_1003848

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1003848
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6092
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001217	Metagenome / Metatranscriptome	745	Y
F008577	Metagenome / Metatranscriptome	331	Y
F029758	Metagenome / Metatranscriptome	187	Y
F058909	Metagenome / Metatranscriptome	134	Y
F059342	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_100384810	F058909	AGAAG	MIDLSNTEINVLMVALDHMEEEISDLMSGRTLRGNMWKERLDACSSIRTKLQKLC*
Ga0114915_100384812	F029758	AGGAG	MRKDDRLNAVEHIWYAESDRWIYIERYASGYLGLNFMQGDEYDYFKKSWCEMDRGTSEFYETMKTDLIKLRVEMSELEFIDKVMWIYFEAKTRQ*
Ga0114915_100384814	F001217	N/A	MSRTKFNGFEKYFIQTALKHAIEEAEKDVLAAEADGNRSIYAPGYFTMVGSEIINKVNSMTLKKFQD*
Ga0114915_100384816	F059342	N/A	MSNTKYNGYTDFPTWKVFHETLSNITFDKYVTPEELKEISLDVVLFGFKMQFGSHLVEEFARVFIESADFQDIADAINNDIR*
Ga0114915_10038489	F008577	N/A	MKLTWEEIKDIANRLDEIIGDNFHEAIYDTILEREGNEELEVSDEDILQIKEQLRRIL*