Scaffold Ga0114915_1001384

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1001384
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10498
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (36.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057295	Metagenome / Metatranscriptome	136	Y
F059880	Metagenome / Metatranscriptome	133	Y
F083269	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_100138419	F083269	AGGAGG	MSIKKVSVTKTSSYTVDGEGIVTRERIVELSHNWTEKDIILFKKIAKQGGVCRIKSIKYTVKPGEKITTSHGWADAGAGKMPGPE*
Ga0114915_100138430	F057295	N/A	MVKLIFLDNEYYQLVREIKVEQVKGNMEGLKAWRDRLQCNHVLKYQGSYLMVRTVEDAEIIK*
Ga0114915_100138431	F059880	GAGG	MKKLHFENTDEFERVFKAKDEEVTDAMVEGIQEAFSFKKKSAELFEITFKDIELVYDITLPSTQWEIALETCMNHYRDLEQSDKAIDAYLLQKAIRLWLS*