Scaffold Ga0114915_1000654

Overview

Basic Information

• Taxon OID: 3300009428
• Scaffold ID: Ga0114915_1000654
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15506
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064632	Metagenome / Metatranscriptome	128	N
F085476	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_100065422	F085476	N/A	MIKLNISKKDYNKIKFKTHHDQLRLIRHEYSNYDSVINDTNWKYVTVKFVNQIAIHFPVLINAAKQWAEYKTTNFVR*
Ga0114915_10006543	F064632	GGA	MINNETIVTASLFGLTAGITTSSMFAIVIGAITVGVVQPFFRVLWTKKLNEIKKCPKCSKKKKK*