Scaffold Ga0114915

Basic Information
Taxon OID	3300009428 Open in IMG/M
Scaffold ID	Ga0114915_1000351 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009428 Open in IMG/M

Scaffold ID

Ga0114915_1000351 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21604
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (71.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

21604

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (71.43%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F040106	Metagenome / Metatranscriptome	162	N
F042905	Metagenome / Metatranscriptome	157	N
F042906	Metagenome / Metatranscriptome	157	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_100035117	F040106	GAGG	MAMQESYCKQMRYSGPESLAPSDATKFDVLIQMEVLAGCEQGCLGCFVDKAIDPKSNQQIIDRAKELADGVKRTGLNLREFVIGPTDLFSAKNTKEVLENKVVQEIMREHTGARIASPAKFDKAPMEKVREIFDILDDENKFRRDMIIEFIMPIGRINEMLDDEDYYKSVMEKVDFFKNDTPKMMDWSWTLQASNVVGKQIDKEKYNRLIKRSVEDFGTIMEMNPAFSRAPNQIIQRKNLFGWNKFLSSVIDEDNAKETVMSMANLYCNSMNFIGITIVPGENGPTTHLNVMLHEQAFFLSNKNLDVTGLTFEEILQRKHELVTKGINKSSKVKDCQDCQFAIACANRLVFEAQESMNINGCVLPKETLEHYNPFDFTWNDDAEKYNMKNGARA*
Ga0114915_100035120	F042905	GGA	MKQPIVHLNDTYAGYWNFKKDKSPVNQAFLRTEINLDILHGCSQMCPGCFIPRKNINDPNGMIELHKLLINGQFYPDEITIGPTDIFDAENFEEVMRHPGLKLLYEISGIGYTTTLLQHEEVVKRKLSMIWDIYQHIHRMPDMDFKVVFDIDKYLDGELDDWYKKLELFNLGSVQFRVNYHKGVFDRIGYNELCQRVKEDFNAPIIITPSFLTDRNVRGKVDQHLAGFRQELLNQKIDREWLQYYTFFDAEFNGLGCQNYSFYNGKLYTNPFLYDNIIQRTPKFETTMDKNTLFDNIDYAQQVDDCNGCEYMMSCAERNIHLYMESRNLVSCVALKEYMYAPH*
Ga0114915_100035121	F042906	GAG	MPLIKNNLFYELTTETQTKPVSAVKLQLDVLDGCHHKCPGCFVARRGNSSNKHQLSDAKKFIRSITDQGILVDEILIGPTDFLASENFYEVMPDLLDIINENSPILAFVSTLIDGDLERWTQYITDNININTEIEIGIATNPAKFYEESYRQLIQSKLDYIDKNLEHEVTYTFVVNIRDYDIDYEKLHKHAVVGFKTVLDFVPSVSRSHKNYLILKILDKFNVFFNELSAYKETEINNIMVDHSHGGLNYTVLNYKTGKWYLSPFMYENMAIYDDMFHIDNFNDVTAIVEKQIQSAKGTECEDCPLFFSCYNRKIILLRDYLGVDRCIAPKENMMAHIH

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114915_1000351

Overview

Ecosystem & Geography

Associated Families

Sequences