Scaffold Ga0114915

Basic Information
Taxon OID	3300009428 Open in IMG/M
Scaffold ID	Ga0114915_1000023 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009428 Open in IMG/M

Scaffold ID

Ga0114915_1000023 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	91017
Total Scaffold Genes	155 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	132 (85.16%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

91017

Total Scaffold Genes

155 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

132 (85.16%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	South Georgia Island
Coordinates	Lat. (^o)	-50.35	Long. (^o)	-39.82	Alt. (m)	Depth (m)	4
Location on Map

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Source Dataset Sampling Location

Location Name

South Georgia Island

Coordinates

Lat. (^o)

-50.35

Long. (^o)

-39.82

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022527	Metagenome / Metatranscriptome	214	Y
F055746	Metagenome / Metatranscriptome	138	N
F066806	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114915_1000023115	F055746	AGG	MTVRFKSFITESVGAKGLAYEKKVFDAMKSAGIEGLNVGSKPGAGYSNQGAGDIEALYNGKEFNIEIKLDKNAQMGGTSIRIDTLNKTHTLVKPDAVDEDAIPFFIEAAKKQDKALKDWVNFVRKQEPLALHKKIPYTIPFGSVTKEAWSAAQKAGYLAKMNTIQSFDSARTIAKAYNRKNVYYIQIGKAGLFYLGSNPLKLDVPEYKGSVNIEFRLGPSGSKARKVEGEDYRVVGAGYRCQGRLKTNIKSKYSLDNPEDIKKLFGV*
Ga0114915_1000023116	F066806	AGGA	MSAEVYQKLGENLNSMVKNKNYELNARFPKGKPGSNDKRYREYRLNLINKELDTSKACIAHLSNKLRQDPKITQIKYNEISPNSSKFPSYSFIFDRQMFDIIIARGANAGERFETRTVTNLDDYFKTRGNSEIAKVVTMMNESHAPFASSEIVSATQRRGATKKEGVPIADLGAIIGDIILTDSQRNTWYISLKDIKGNTFSSYSGAASLFDKEGNLQPDSEGATFLNTFGVDLNKVQSGFDERGNINTASIGRPKLSVSRVNAREIEKIFNRAWGMNYFYVRRLTSGWKVFWLGKTKLDKLSKNIRVNSIRYPTKTSKQITILCSNDVEDYVIELRNSKAGEYPNDTKFKVKK*
Ga0114915_100002336	F022527	AGGA	MWVAKPNLNNKNGIKEFPTAKEAVAYLEEYTGIEMAYDRNRKTKEITYDWEIIEKLWKKRVDNS*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114915_1000023

Overview

Ecosystem & Geography

Associated Families

Sequences