Scaffold Ga0115547_1073698

Overview

Basic Information

• Taxon OID: 3300009426
• Scaffold ID: Ga0115547_1073698
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100420
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1158
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009104	Metagenome	323	Y
F070570	Metagenome	123	N
F092736	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115547_10736982	F092736	N/A	MTTIVDKEEKLFVRKLAFNELENISKDISSFLTSYISEIKPDPFQEEQNKNKNKKQTELNFGVKHENR*
Ga0115547_10736983	F070570	GGAG	MKIDNEALIELRKIRAAMDNAYDKLNKPLYEKHIAGKVSYKETIPFNLIQENFEFIATKIKELEESAGVE*
Ga0115547_10736984	F009104	AGGAG	MANDHAQDRYDPPSLGSDFEKDYFGDVNIGEVFRLRPDNKAKSFRKVKDGVAFDISERTEVQLQPRDEIYVKS*