Scaffold Ga0114997_10452863

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10452863
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 688
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED64 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005620	Metagenome	395	Y
F067209	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_104528631	F005620	N/A	MLSTKQITKHIATFKTFCKNNRLRLKEDDDGLPVARAIGKFNTEQFFCNFKDGSIGVYVTRETPRQFTYLNKKLERLGCIPTQLGDFEAAYDLEWMNIPPVARLLKIRKGAAKVKDPKWLREL*
Ga0114997_104528632	F067209	GAG	MSLNSNPKDEEGQLSITDWVTQFSDGKSEVETAELAAKFMFAMSYYHEKMKLHILLHPLFYLAGFLTAYYLGGE*