Scaffold Ga0114997_10194628

Overview

Basic Information

• Taxon OID: 3300009425
• Scaffold ID: Ga0114997_10194628
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1170
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Peptostreptococcaceae → Terrisporobacter → Terrisporobacter glycolicus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 75.235
  • Long. (^o): -150.0691
  • Depth (m): 79

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035490	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114997_101946281	F035490	AGGAG	MNKIKLGKRTWVNSKGKKQKANTFTYKENGKKVVVQSPNKQWLEQEAEKILLRIGNINPKNMNVILSVPLSYAWEIYSKKCRSRANEPTTGFSKTTFKEYSEHYKHIQKHCGDIDLTKIDVEYVADFMKKIDELDYDYRKKIFHTFSRIYDTQVGMAETDPFKVNVFKTATFFKKEDKPKKKNTGKIDFEEWNFDRIKQIIDTVPSEPYQLMFKLMAETSCRPSEARAAQRKNFHFKRNIPVFEITNSVDFEKSLVPPKTEAGYRELEISSSLKDQLIDYMNTLPEDQQCIFLNSKGKFHDLKNMITYLDDALE